• Frost, L., A.M. Bedoya, and L. Lagomarsino. Strong phylogenetic signal despite high phylogenetic complexity in an Andean radiation (Freziera, Pentaphylacaceae). In review at Systematic Biology.
  • Bedoya, A.M. and A.J. Pérez-Castañeda. New records of riverweeds (Podostemaceae) from the tropical Andes (Ecuador and Colombia): getting our feet wet to bypass collection bias in Neotropical Rivers. In review at Phytotaxa.
  • O’Leary, N., P. Lu-Irving, F.R.G. Salimena, T.R. dos Santos Silva, P.H. Cardoso, F. Mirra, J. Schaefer, P. Moroni, A.M. Bedoya,
    L.F. Viccini, C. Bitencourt, V.A. Thode, and R.G. Olmstead. In prep. Making Lantaneae (Verbenaceae) taxonomy useful: A phylogenetic classification. In review at TAXON. https://ssrn.com/abstract=4178574
  • Muñoz-Sánchez, A.M. L. Rojas-Castellanos, M. Medina-Merchán, and A.M. Bedoya. Plantas asociadas a ambientes húmedos del Humedal Coroncoro. In review at Field Museum Field Guides.
  • Bedoya, A.M., and R.G. Olmstead. 2022 Strange but common in isolated environments: new records of Marathrum (Podostemaceae) in drainage basins of Colombia. Aquatic Botany 177:103483.
  • Bedoya, A.M., A.D. Leaché, and R.G. Olmstead. 2021. Andean uplift, drainage basin formation, and the evolution of riverweeds (Marathrum, Podostemaceae) in northern South America. New Phytologist 232: 2175–2190.
  • Lu-Irving, P., A.M. Bedoya, F.R. Salimena, T.R. Dos Santos Silva, L.V. Viccini, R.G. Olmstead. 2021. Phylogeny and biogeography in Lantana and Lippia (Verbenaceae). American Journal of Botany 108: 1354–1373.
  • Bedoya, A.M., and A.D. Leaché. Characterization of a pericentric inversion in Plateau Fence Lizards (Sceloporus tristichus): Evidence from chromosome-scale genomes. Accepted at G3: Genes, Genomes, Genetics. 2021;, jkab036, https://doi.org/10.1093/g3journal/jkab036
  • Bedoya, A.M., B.R. Ruhfel, C.T. Philbrick, S. Madriñán, C.P. Bove, A. Mesterházy, and R.G. Olmstead. 2019. Plastid genomes of five species of riverweeds (Podostemaceae): structural organization and comparative analysis in Malpighiales. Frontiers in Plant Science 10: 1035.
  • Olmstead, R.G., and A.M. Bedoya. 2019. Whole genomes: the holy grail. A commentary on: ‘Molecular phylogenomics of tribe Shoreeae (Dipterocarpaceae) using whole plastid genomes.’ Annals of Botany 123, iv–v.
  • Madriñán, S., Rial, A., A.M. Bedoya, M. Fernández. 2017. Plantas acuáticas de la Orinoquía Colombiana. Ediciones Uniandes. ISBN: 978-958-774-526-9. pp. 656.
  • Fernández, M., A.M. Bedoya, S. Madriñán, 2015. Plantas acuáticas de las planicies inundables de la Orinoquia colombiana. Biota Colombiana 16: 96–105.
  • Bedoya, A.M., and S. Madriñán. 2015. Evolution of the aquatic habit in Ludwigia (Onagraceae): morpho-anatomical adaptive strategies in the Neotropics. Aquatic Botany 120: 352–362.

In Preparation
  • Brightly, W., A.M. Bedoya, M. Carlson, M.G. Rottersman, and C.A.E. Strömberg. The evolution of seed dispersal strategy: insights from the Melic grasses and their relatives (Meliceae, Pooideae). Annals of Botany.
  • Ball, L., A.M. Bedoya, L. Lagomarsino. A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae. Applications in Plant Sciences.