Peer-reviewed and In Press
  1. Frost, L., A.M. Bedoya, and L. Lagomarsino. Accepted. Strong phylogenetic signal despite high phylogenetic complexity in an Andean radiation (Freziera, Pentaphylacaceae).  Systematic Biology.
  2. Ball, L., A.M. Bedoya, L. Lagomarsino. In press. A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae. Applications in Plant Sciences.
  3. Bedoya, A.M. and A.J. Pérez-Castañeda. 2023. New records of riverweeds (Podostemaceae) from the tropical Andes (Ecuador and Colombia): getting our feet wet to bypass collection bias in Neotropical Rivers. Phytotaxa 585: 274–280.
  4. Muñoz-Sánchez, A.M. L. Rojas-Castellanos, M. Medina-Merchán, and A.M. Bedoya. Plants associated with humid environments of the Coroncoro wetland (Villavicencio, Colombia). Field Museum Field Guides 1303.
  5. O’Leary, N., P. Lu-Irving, F.R.G. Salimena, T.R. dos Santos Silva, P.H. Cardoso, F. Mirra, J. Schaefer, P. Moroni, A.M. Bedoya,
    L.F. Viccini, C. Bitencourt, V.A. Thode, and R.G. Olmstead. 2023. Making Lantaneae (Verbenaceae) taxonomy useful: A phylogenetic classification. TAXON 
  6. Bedoya, A.M., and R.G. Olmstead. 2022 Strange but common in isolated environments: new records of Marathrum (Podostemaceae) in drainage basins of Colombia. Aquatic Botany 177:103483.
  7. Bedoya, A.M., A.D. Leaché, and R.G. Olmstead. 2021. Andean uplift, drainage basin formation, and the evolution of riverweeds (Marathrum, Podostemaceae) in northern South America. New Phytologist 232: 2175–2190.
  8. Lu-Irving, P., A.M. Bedoya, F.R. Salimena, T.R. Dos Santos Silva, L.V. Viccini, R.G. Olmstead. 2021. Phylogeny and biogeography in Lantana and Lippia (Verbenaceae). American Journal of Botany 108: 1354–1373.
  9. Bedoya, A.M., and A.D. Leaché. Characterization of a pericentric inversion in Plateau Fence Lizards (Sceloporus tristichus): Evidence from chromosome-scale genomes. Accepted at G3: Genes, Genomes, Genetics. 2021;, jkab036, https://doi.org/10.1093/g3journal/jkab036
  10. Bedoya, A.M., B.R. Ruhfel, C.T. Philbrick, S. Madriñán, C.P. Bove, A. Mesterházy, and R.G. Olmstead. 2019. Plastid genomes of five species of riverweeds (Podostemaceae): structural organization and comparative analysis in Malpighiales. Frontiers in Plant Science 10: 1035.
  11. Olmstead, R.G., and A.M. Bedoya. 2019. Whole genomes: the holy grail. A commentary on: ‘Molecular phylogenomics of tribe Shoreeae (Dipterocarpaceae) using whole plastid genomes.’ Annals of Botany 123, iv–v.
  12. Madriñán, S., Rial, A., A.M. Bedoya, M. Fernández. 2017. Plantas acuáticas de la Orinoquía Colombiana. Ediciones Uniandes. ISBN: 978-958-774-526-9. pp. 656.
  13. Fernández, M., A.M. Bedoya, S. Madriñán, 2015. Plantas acuáticas de las planicies inundables de la Orinoquia colombiana. Biota Colombiana 16: 96–105.
  14. Bedoya, A.M., and S. Madriñán. 2015. Evolution of the aquatic habit in Ludwigia (Onagraceae): morpho-anatomical adaptive strategies in the Neotropics. Aquatic Botany 120: 352–362.

Preprints/In Review
  1. Bedoya, A.M. In Review. Botany and Geogenomics: constraining geological hypothesis with large-scale genetic data derived from plant DNA. Invited for ”American Journal of Botany Synthesis Papers and Prize”. https://ecoevorxiv.org/repository/view/5782/
  2. Ball, L., A.M. Bedoya, S. Rodr´ıguez-Machado, D. Paredes-Burneo, S. Biernacki, S. Rutledge, D. Boyd, D. Vander-Pluym, A. Chipps, N. Lord, and P. Chakrabarty. In review. What "unexplored" means: Mapping undersampled regions in natural history collections. Science.
  3. Brightly, W., A.M. Bedoya, M. Carlson, M.G. Rottersman, and C.A.E. Strömberg. In Review. The evolution of seed dispersal strategy: insights from the Melic grasses and their relatives (Meliceae, Pooideae). Annals of Botany.

In Preparation
  1. Bedoya, A.M, C. Taylor, A. Mumford, and L. Lagomarsino. The interplay of biogeographic history, floral morphology, and climatic niche in a distinct group of Netropical plants. Target journal: Proceedings of the Royal Society B. https://doi.org/10.32942/X2R6OH